PUBLICATION

Peer-Reviewed Papers (as of Jan, 2024)

 

    • Yeom, J., Park, J.S., Jung, S.W., Lee, S., Kwon H., Yoo, S.M.* High-throughput genetic engineering tools for regulating gene expression in a microbial cell factory. Crit Rev Biotechnol 2023, 43(1):82-99 (Jan) (IF: 9.062)

 

    • Identification of a gene cluster for D-tagatose utilization in Escherichia coli B2 phylogroup. iScience 2022, 25(12), 105655 (Nov) (IF: 6.107)

 

    • Yoo, S.M.*, Jeon Y-M., Heo, S-Y. Electrochemiluminescence Systems for the Detection of Biomarkers: Strategical and Technological Advances. Biosensors 2022, 12(9), 738 (Sep) (IF: 5.743)

 

    • Kim, D.M., Yoo, S.M.* Colorimetric Systems for the Detection of Bacterial Contamination: Strategy and Applications. Biosensors 2022, 12(7), 532 (July) (IF: 5.743)

 

    • Kim, S., Ansah, I.B., Park, J.S., Dang, H., Choi, N., Lee, W.-C., Lee, S.H., Jung, H.S., Kim, D.-H., Yoo, S.M.*, Choo, J.*, Kim, S.-H.*, Park, S.-G.* Early and direct detection of bacterial signaling molecules through one-pot Au electrodeposition onto paper-based 3D SERS substrates. Sens Actuators B: Chem 2022, 358, 131504 (May) *Co-corresponding author (IF: 9.221)

 

    • Yeom, J., Park, J.S., Jeon, Y.M., Song, B.S., Yoo, S.M.* Synthetic fused sRNA for the simultaneous repression of multiple genes.Appl Microbiol Biotechnol 2022, 106(7), 2517-2527 (Apr) (IF: 5.56)

 

    • Kim, D.M., Yoo, S.M.* Electrochemical sensors for antibiotic susceptibility testing: Strategies and applications. Chemosensors 2022, 10, 53 (Jan) (IF: 4.229)

 

    • Lee, H.M., Ren, J., Yu, M.S., Kim, H., Kim, W.Y., Shen, J., Yoo, S.M., Eyun, S.I., Na, D. Construction of a tunable promoter library to optimize gene expression in Methylomonas sp. DH-1, a methanotroph, and its application to cadaverine production. Biotechnol Biofuels 2021, 14(1), 228 (Dec) (IF: 7.67)

 

    • Kim, D.M., Yoo, S.M.* Aptamer-conjugated quantum dot optical biosensors: Strategies and applications. Chemosensors 2021, 9(11), 318 (Nov) (IF: 4.229)

 

    • Kang, M., Jo, Y., Mun, C., Yeom, J., Park, JS., Jung, HS., Kim, DH., Park, SG.*, Yoo, S.M.* Nanoconfined 3D redox capacitor-based electrochemical sensor for ultrasensitive monitoring of metabolites in bacterial communication. Sens Actuators B: Chem 2021, 345, 130427 (Oct) *Co-corresponding author (IF: 9.221)

 

    • Jung, S.W., Yeom, J., Park, J.S., Yoo, S.M.* Recent advances in tuning the expression and regulation of genes for constructing microbial cell factories. Biotechnol Adv 2021, 50, 107767 (Sep-Oct) (IF: 17.681)

 

    • Shin, S.Y., Kim, D.M., Jo, Y., Kim, J.M., Yoo, S.M.* DNA Microarray-based detection of bacteria in samples containing antibiotics: Effect of antibiotics on the performance of pathogen detection assays. Biotechnol Bioproc Eng, 2021, 26(3), 447-455 (June) (IF: 3.386)

 

    • Kim, D.M., Go, M.J., Lee, J., Na, D.*, Yoo, S.M.* Recent Advances in Micro/Nanomaterial-Based Aptamer Selection Strategies. Molecules (Basel, Switzerland), 2021, 26(17), 5187 (Aug) (IF: 4.927) *Co-corresponding author 

 

    • Kim, D.M., Park, J.S., Jung, S.-W., Yeom, J., Yoo, S.M.* “Biosensing applications using nanostructure-based localized surface plasmon resonance biosensors.” Sensors 2021, 21(9), 3191 (May) (IF: 3.847)

 

    • Yoo, S.M., Jung, S.-W., Yeom, J., Lee, S.Y., Na, D. Tunable gene expression system independent of downstream coding sequence. ACS Syn Biol 2020, 9(11), 2998–3007 (Oct) (IF: 5.249)

 

    • Kim, S., Kim, Y., Suh, D.H., Lee, C.H., Yoo, S.M., Lee, S.Y., Yoon, S.H. Heat-responsive and time-resolved transcriptome and metabolome analyses of Escherichia coli uncover thermo-tolerant mechanisms. Sci Rep 2020, 10, 17715 (Oct) (IF: 4.997)

 

    • Kim, D.M., Yoo, S.M.* DNA-modifying enzyme reaction-based biosensor for disease diagnostics: recent biotechnological advances and future perspectives. Crit Rev Biotechnol 2020, 40(6), 787-803 (Sep) (IF: 9.062)

 

    • Heo, N.S.,Shukla, S., Oh, S.Y., Bajpai,V.K., Lee, S.U., Cho, H-J., Kim, S., Kim, Y., Kim, H.J., Lee, S.Y., Jun, Y-S., Oh, M-H., Han-Y-.K.*, Yoo, S.M.*, Huh, Y.S.* Shape-controlled assemblies of graphitic carbon nitride polymer for efficient sterilization therapies of water microbial contamination via 2D g-C3N4 under visible light illumination. Mater Sci Eng C 2019, 104, 109846 ‡Co-corresponding author (Nov) (IF: 8.457)

 

    • Yang, D‡., Yoo, S.M.‡, Gu, C., Ryu, J.Y., Lee, J.E., Lee, S.Y. Expanded synthetic small regulatory RNA expression platforms for rapid and multiplex gene expression knockdown. Metab Eng 2019, 54, 180-190. ‡Co-first author (July) (IF: 8.829)

 

    • Noh, M.‡, Yoo, S.M.‡, Yang, D., Lee, S.Y. Broad-spectrum gene repression using scaffold engineering of synthetic sRNAs. ACS Synth Biol 2019, 8(6), 1452-1461. ‡Co-first author (June) (IF: 5.249)

 

    • Ren, J., Na, D.*, Yoo, S.M.* Optimization of chemico-physical transformation methods for various bacterial species using diverse chemical compounds and nanomaterials.  J Biotechnol 2018, 288, 55-60 *Co-corresponding author (IF: 3.595)

 

    • Yang, D., Kim, W.J., Yoo, S.M., Choi, J.H., Ha, S.H., Lee, M.H., Lee, S.Y. “Repurposing type III polyketide synthase as a malonyl-CoA biosensor for metabolic engineering in bacteria. Proc. Natl. Acad. Sci. USA 2018, 115, 9835-9844 (IF: 12.777)

 

    • Noh, M.‡, Yoo, S.M.‡, Kim, W.J., Lee, S.Y. Gene expression knockdown by modulating synthetic small RNA expression in Escherichia coli. Cell Syst 2017, 5(4), 418-426. ‡Co-first author (IF: 11.091). 

 

    • Oh, S.Y., Heo, N.S., Shukla, S., Cho, H.J., Vilian, A.T.E., Kim, J., Lee, S.Y., Han, Y.K., Yoo, S.M.*, Huh, Y.S.* Development of gold nanoparticle-aptamer-based LSPR sensing chips for the rapid detection of Salmonella in pork meat. Sci Rep 2017, 7(1), 10130. ‡Co-corresponding author (IF: 4.996)

 

    • Kim, D.-K., Kim, D.M., Yoo, S.M.*, Lee, S.Y. Controllable gold-capped nanoporous anodic alumina chip for label-free, specific detection of bacterial cells. RSC Adv 2017, 7, 18815-18820 (IF: 4.036)

 

    • Ren, J., Lee, H., Yoo, S.M., Yu, M.S., Park, H., Na, D. Combined chemical and physical transformation method with RbCl and sepiolite for the transformation of various bacterial species. J Microbiol Biotechnol 2017, 135, 48-51. (IF: 3.277)

 

    • Sung, M.‡, Yoo, S.M.‡, Jun, R., Lee, J.E., Lee, S.Y., Na, D. Optimization of Phage λ Promoter Strength for Synthetic Small Regulatory RNA-based Metabolic Engineering. ‡Co-first author Biotechnol Bioprocess Eng 2016, 21(4), 483-490. (IF: 3.386)

 

    • Yoo, S.M., Baek, Y.-K., Shin, S., Kim, J.-H., Jung, H.-T., Choi, Y.-K, Lee, S.Y. Single walled carbon nanotube-based electrical biosensor for the label-free detection of pathogenic bacteria. J Nanosci Nanotechnol 2016, 16(6), 6520-6525. (IF: 1.134)    

 

    • Gwak, R., Kim, H., Yoo, S.M., Lee, S.Y., Lee, G-.J., Lee, M-.K. Rhee, C-.K., Kang, T., Kim, B. Precisely determining ultralow level UO22+ in natural water with plasmonic nanowire interstice sensor. Sci Rep 2016, 6, 19646. (Jan) (IF: 4.996)

 

    • Kang, M.‡, Yoo, S.M.‡, Gwak R., Eom, G., Kim, J.H., Lee, S.Y., Kim, B. Electro-triggering and electrochemical monitoring of dopamine exocytosis from a single cell by ultrathin Au nanowire electrodes. Nanoscale 2016, 8(1), 214-218. ‡Co-first author (IF: 8.307)

 

    • Yoo, S.M., Lee, S.Y. Optical biosensors for the detection of pathogenic microorganisms. Trends Biotechnol 2016, 34(1), 7-25. (IF: 21.942)

 

    • Yoo, S.M., Kim, D.M., Lee, S.Y. Multispot array combined with S1 nuclease-Mediated elimination of unpaired nucleotides. Biochip J 2015, 9(2), 156-163 (IF: 4.229)

 

    • Yoo, S.M., Kim, D.-K., Lee, S.Y. Aptamer-functionalized localized surface plasmon resonance sensor for the multiplexed detection of different bacterial species. Talanta 2015, 132, 112-117 (IF: 6.556)  

 

    • Kim, H., Kang, T., Lee, H., Ryoo, H., Yoo, S.M., Lee, S.Y., Kim, B. Facile fabrication of multi-targeted and stable biochemical SERS sensors. Chem Asian J 2013, 8(12), 3010-3014. (IF: 4.839)

 

    • Yoo, S.M‡., Na, D‡., Lee, S.Y. Design and use of synthetic regulatory small RNAs to control gene expression in Escherichia coli. Nat Protoc 2013, 8(9), 1694–1707. ‡Co-first author (IF: 17.021)

 

    • Yoo, S.M.‡, Kang, M.‡, Kang, T., Kim, D.M., Lee, S.Y., Kim, B. Electro-triggered, spatioselective, quantitative gene delivery into a single cell nucleus by Au nanowire nanoinjector. Nano Lett 2013, 13 (6), 2431–2435 ‡Co-first author (IF: 11.238)

 

    • Na, D., Yoo, S.M., Chung, H., Park, H., Park, J.H., Lee, S.Y. Metabolic engineering of Escherichia coli using synthetic small regulatory RNAs. Nat Biotechnol 2013, 31(2), 170-174. (IF: 68.164)

 

    • Kang, T., Yoo, S.M., Kang, M., Lee, H., Kim, H., Lee, S.Y., Kim, B. Single-step multiplex detection of toxic metal ions by Au nanowires-on-chip sensor using reporter elimination. Lab Chip 2012, 12(17), 3077-3081. (IF: 7.517)

 

    • Yoo, S.M., Kang, T., Lee, S.Y., Kim, B. Combining a nanowire SERRS sensor and a target recycling reaction for ultrasensitive and multiplex identification of pathogenic fungi. Small 2011, 7(23), 3371-3376. (IF: 15.153)

 

    • Kim, D.-K.‡, Yoo, S.M.‡, Park, T.J., Yoshikawa, H., Tamiya E., Lee, S.Y. Plasmonic properties of the multispot copper-capped nanoparticle array chip and its application to optical biosensors for pathogen detection of multiplex DNAs. Anal Chem 2011, 83(16), 6215–6222. ‡Co-first author (IF: 8.008)

 

    • Yoo, S.M., Kang, T., Kim, B., Lee, S.Y. Detection of single nucleotide polymorphisms by a gold nanowire-on-film SERS sensor coupled with S1 nuclease treatment. Chem-A Eur J 2011, 17(31), 8657-8662. (IF: 5.02)

 

    • Baek, Y.K., Jung, D.H., Yoo, S.M., Shin S., Kim, J.H., Jeon H.-J., Choi, Y.K., Lee, S.Y., Jung, H.T.  Label-free detection of DNA hybridization on pyrene-functionalized single-walled carbon nanotubes via various DNA binding methods. J Nanosci Nanotechnol 2011, 11(5), 4210-4216. (IF: 1.134)

 

    • Kang, T., Yoo, S.M., Yoon, I., Lee, S.Y., Choo J., Kim, B. Au nanowire-on-film SERRS sensor for ultrasensitive Hg2+ detection. Chem-A Eur J 2011, 17(7), 2211-2214. (IF: 5.02)

 

    • Park, T.J., Lee, S.-K., Yoo, S.M., Yang, S-.M., Lee, S.Y. Development of reflective biosensor using fabrication of functionalized photonic nanocrystals. J Nanosci Nanotechnol 2011, 11(1), 632-637. (IF: 1.134)

 

    • Kang, T.‡, Yoo, S.M.‡, Yoon, I., Lee, S.Y., Kim, B. Patterned multiplex pathogen DNA detection by Au particle-on-wire SERS sensor. Nano Lett 2010, 10 (4), 1189–1193. ‡Co-first author (IF: 11.238)

 

    • Yoo, S.M., Lee, S.Y. DNA microarray for the identification of pathogens causing bloodstream infections Expert Rev Mol Diagn 2010, 10(3), 263-268. (IF: 5.67)

 

    • Yoo, S.M., Choi, J.Y., Yun, J.K., Choi, J.K., Lee, K.W., Kim, J.M., Lee, S.Y. DNA Microarray-based identification of bacterial and fungal pathogens in bloodstream infections. Mol Cell Probes 2010, 24(1), 44-52. (IF: 3.285)

 

    • Baek, Y.K.,Yoo, S.M., Kang, T., Jeon H-.J,Kim K, Lee, S.Y.,Kim, B., Jung, H.T.Large-scale, highly ordered chitosan-core Au-shell nanopatterns with plasmonic tunability: A top-down approach to fabricate in core-shell nanostructure. Adv Funct Mater 2010, 20(24), 4273–4278. (IF: 19.924)

 

    • Yoo, S.M., Lee, S.Y., Chang, K.H., Yoo, S.Y., Yoo, N.C., Keum, K.C., Yoo, W.M., Kim, J.M., Choi, J.Y. High-throughput identification of clinically important bacterial pathogen using DNA microarray. Mol Cell Probes 2009, 23(3-4), 171-177. (IF: 3.285)

 

    • Yoo, S.M., Choi, J.H., Lee, S.Y., Yoo, N.C. Applications of DNA microarray in Disease Diagnostics. J Microbiol Biotechn. 2009, 19(7), 635–646. (IF: 3.277)

 

    • Baek, Y.K.,Yoo, S.M.,Kim, J.H., Jung, D.H., Kim, Y.S., Choi, Y.K., Lee, S.Y., Jung, H.T. The effect of network density on the DNA-sensing performance of single-walled carbon nanotubes. J Phys Chem C. 2009, 113(52), 21566–21571. (IF: 4.177)

 

    • Kim, J.H., Kang, T., Yoo, S.M., Lee, S.Y., Kim, B., Choi, Y.K. A well-ordered flower-like gold nanostructure for integrated sensors via surface-enhanced Raman scattering. Nanotechnology 2009, 20(23): 1-6. (IF: 3.953)

 

    • Park, T.J., Yoo, S.M., Keum, K.C., Lee, S.Y. Microarray of DNA-protein complexes on poly-3-hydroxybutyrate surface for pathogen detection. Anal Bioanal Chem. 2009, 393, 1639-1647. (IF: 4.478)

 

    • Kim, K-.H., Kim, J-.H., Huang, X-.J., Yoo, S.M., Lee, S.Y., and Choi, Y-.K. Doping Free Nanoscale Complementary Carbon Nanotube Field Effect Transistors with DNA-templated Molecular Lithography. Small 2008, 4(11), 1959-1963.  (IF: 15.153)

 

    • Yoo, S.M., Lee, S.Y., Diagnosis of Pathogens Using DNA Microarray. Recent patents on Biotechnol 2008, 2(2): 124-129. (IF: 0.317)

 

    • Keum, K.C.‡, Yoo, S.M.‡, Lee, S.Y., Chang, K.H., Yoo, N.C., Yoo, W.M., Kim, J.M., Choi, J.Y., Kim, J.S., Lee, G. DNA microarray-based detection of nosocomial pathogenic Pseudomonas aeruginosa and Acinetobacter baumannii. Mol Cell Probes 2006, 20, 42-50. ‡Co-first author (IF: 3.285)

 

    • Yoo, S.M., Keum, K.C., Yoo, S.Y., Choi, J.Y., Chang, K.H., Yoo, N.C., Yoo, W.M., Kim, J.M., Lee Duke, and Lee, S.Y. Development of DNA Microarray for Pathogen Detection. Biotech Bioproc Eng. 2004, 9:93-99. (IF: 3.386)   

 

    • Yoo, S.Y., Chang, K. H., Yoo, S.M., Park, S.Y., Yoo, N.C., Keum, K.C., Yoo W.M., Kim, J. M., and Lee S.Y. Design of ITS and 23S rDNA-targeted probes and its usefulness for the identification of bacterial pathogens. Genome Informatics2002, 13:589-590. (IF: 1.62)